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Fast Breaking Comments

By Kim A. Brogden

ESI Special Topics, August 2006
Citing URL - http://www.esi-topics.com/fbp/2006/august06-KimABrogden.html

A closer look at the work of Kim A. Brogden.Kim A. Brogden answers a few questions about this month's fast breaking paper in the field of Microbiology. The author has also sent along tables/images of their work.


From •>>August 2006

Field: Microbiology
Article Title: Antimicrobial peptides: Pore formers or metabolic inhibitors in bacteria?
Authors: Brogden, KA
Journal: NAT REV MICROBIOL
Volume: 3
Issue: 3
Page: 238-250
Year: MAR 2005
* Univ Iowa, Dept Periodont, Iowa City, IA 52242 USA.
* Univ Iowa, Dept Periodont, Iowa City, IA 52242 USA.
* Univ Iowa, Dow Inst Dent Res, Coll Dent, Iowa City, IA 52242 USA.

Introduction:

Well over 800 different peptides with antimicrobial activity 9 have been found in many tissues and cell types of a variety of animal, plant, and invertebrate species 1, 5, 10, 11. Select neuropeptides (e.g., Substance P, enkelytin, Peptide B, Neuropeptide Y, PYY, and skin PYY); peptide hormones (e.g., a MSH, adenoregulin, adrenomedullin AM, proadrenomedullin N-terminal 20 peptide, corticostatin RK-1, neurotensin, and bradykinin); chemokines and cytokines (e.g., MIP3α, CXCL9, -10, and -11, interferon-γ, platelet basic protein, CXCL4, CCL5, and other members of the CC, CXC, CX3C, and C subfamilies); and fragments of larger proteins (e.g., lactoferricin from lactoferrin, casocidin I from human casein, and antimicrobial domain fragments from bovine alpha-lactalbumin, human haemoglobin, lysozyme, and ovalbumin) also are reported to have antimicrobial activity 2.

All of these peptides are an abundant and diverse group of molecules with potent, broad-spectrum antimicrobial activity against Gram-negative and Gram-positive bacteria, fungi, and viruses.

ST:  Why do you think your paper is highly cited?

The article is a comprehensive review of antimicrobial peptides: the history of their discovery; the major classes; their characteristics (Table 1); the methods used to study antimicrobial peptide activity (on bacterial cells and model membranes); and mechanisms of antimicrobial activity. The article presents emerging concepts that antimicrobial peptides can kill bacteria by a variety of mechanisms.

Initial work in our field suggested that antimicrobial activity was a result of antimicrobial peptide action on microbial membranes. The amino acid composition, amphipathicity, cationic charge, and size, allows many antimicrobial peptides to attach and insert into well-defined membrane bilayers forming pores through "barrel-stave," "toroid pore", or "carpet" mechanisms. However, the roles of peptide attraction, attachment, insertion, and pore formation in inducing ultrastructural damage and killing of microorganisms still needs to be clarified.

ST:  Does it describe a new discovery, methodology, or synthesis of knowledge?

Although the formation of ion channels, transmembrane pores, and extensive membrane rupture, eventually leads to the lysis of microbial cells (Table 2), there is a growing speculation that they are not necessarily the sole mechanisms of microbial killing. In fact, there is mounting evidence suggesting that antimicrobial peptides have other intracellular targets that are capable of rapidly killing microorganisms. Some of these are early, basic observations showing that there are alternate sites of antimicrobial peptide activity.

In fact, many of these antimicrobial peptides appear to have intracellular targets (Table 2). They can alter cytoplasmic membrane septum formation (e.g., PR-39, indolicidin, and microcin 25); inhibit cell wall synthesis (e.g., mersacidin); inhibit nucleic acid and protein synthesis (e.g., pleurocidin, dermaseptin, PR-39, HNP-1, HNP-2, and indolicidin); or inhibit enzymatic activity (e.g., histatins, pyrrhocoricin, drosocin, and apidaecin).

ST:  Could you summarize the significance of your paper in layman’s terms?


“This research identified a new class of host-derived peptide antibiotics as part of the innate immune system that are significantly different from those previously reported.”

Antimicrobial peptides are an abundant and diverse group of molecules that are produced by many tissues and cell types in a variety of invertebrate, plant, and animal species. They are a chemically and structurally diverse and multifunctional group of molecules that are versatile in their mechanisms of microbial killing. They have a variety of applications to prevent or treat infectious disease in humans, animals, and plants; retard contamination of foods; and retard spoilage of processed foods.

ST:  How did you become involved in this research, and were any problems encountered along the way?

In 1996, I entered the field of antimicrobial peptide research when we isolated three small anionic peptides (AP) from sheep lung lavage fluids that were antimicrobial, for ovine pathogens. The peptides, H-GADDDDD-OH, H-GDDDDDD-OH, and H-DDDDDDD-OH, were found in ovine surfactant extracts, bronchoalveolar lavage fluid, and airway epithelial cells. They occurred in mM concentrations, required zinc as a cofactor for antimicrobial activity, and were rapidly antimicrobial against both Gram-positive and Gram-negative organisms.

This research identified a new class of host-derived peptide antibiotics as part of the innate immune system that are significantly different from those previously reported. Antimicrobial anionic peptide (AP)-like molecules were later detected in human BAL fluids and pulmonary epithelia in studies funded by the Cystic Fibrosis Foundation. Such research demonstrated to us that not all antimicrobial peptides kill by inducing lytic pores in microbial membranes (Figure 3).

ST:  Are there any social or political implications for your research?

The diverse mechanisms of antimicrobial activity lead to a number of questions. First, how do these mechanisms relate to applications where antimicrobial peptides are put into substrates or tethered to surfaces?

Alternate mechanisms of antimicrobial activity can explain why many of these peptides retain their specificity and antimicrobial activity when incorporated into thin films, linked to solid phase surfaces, or conjugated to larger carrier molecules 3, 4, 6-8.

Second, can carrier proteins be used to "direct" antimicrobial activity to specific microorganisms in a polymicrobial community? Such activity could target antimicrobial activity towards a specific pathogen in a community of commensal organisms thus eliminating the problems associated with eliminating the entire community of commensals (e.g., oral cavity).

This field is maturing rapidly. The future is promising with additional applications to come! Currently, there are over 202 US patent applications involving antimicrobial peptides.End

Kim A. Brogden, Ph.D.
Professor, Department of Periodontics and
Dows Institute for Dental Research
College of Dentistry
The University of Iowa
Iowa City, IA, USA


Acknowledgments: this work was supported by funds from NIH/NIDCR R01 DE014390.


ESI Special Topics, August 2006
Citing URL - http://www.esi-topics.com/fbp/2006/august06-KimABrogden.html

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