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Kim A. Brogden answers a
few questions about this month's fast breaking paper in
the field of Microbiology. The
author has also
sent along tables/images of their work.
From
•>>August 2006
Field:
Microbiology
Article Title: Antimicrobial peptides: Pore formers or metabolic inhibitors in bacteria?
Authors: Brogden, KA
Journal: NAT REV MICROBIOL
Volume: 3
Issue: 3
Page: 238-250
Year: MAR 2005
* Univ Iowa, Dept Periodont, Iowa City, IA 52242 USA.
* Univ Iowa, Dept Periodont, Iowa City, IA 52242 USA.
* Univ Iowa, Dow Inst Dent Res, Coll Dent, Iowa City, IA 52242 USA.
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Introduction:
Well over 800 different peptides with antimicrobial
activity 9 have been found in many tissues and cell
types of a variety of animal, plant, and invertebrate species 1,
5, 10, 11. Select neuropeptides (e.g., Substance P,
enkelytin, Peptide B, Neuropeptide Y, PYY, and skin PYY);
peptide hormones (e.g., a MSH,
adenoregulin, adrenomedullin AM, proadrenomedullin N-terminal
20 peptide, corticostatin RK-1, neurotensin, and bradykinin);
chemokines and cytokines (e.g., MIP3α, CXCL9, -10, and
-11, interferon-γ, platelet basic protein, CXCL4, CCL5,
and other members of the CC, CXC, CX3C, and C subfamilies);
and fragments of larger proteins (e.g., lactoferricin from
lactoferrin, casocidin I from human casein, and antimicrobial
domain fragments from bovine alpha-lactalbumin, human
haemoglobin, lysozyme, and ovalbumin) also are reported to
have antimicrobial activity 2.
All of these peptides are an abundant and diverse group of
molecules with potent, broad-spectrum antimicrobial activity
against Gram-negative and Gram-positive bacteria, fungi, and
viruses.
Why
do you think your paper is highly cited?
The article is a comprehensive review of antimicrobial peptides:
the history of their discovery; the major classes; their
characteristics (Table 1); the methods used to study antimicrobial
peptide activity (on bacterial cells and model membranes); and
mechanisms of antimicrobial activity. The article presents emerging
concepts that antimicrobial peptides can kill bacteria by a variety of
mechanisms.

Initial work in our field suggested that antimicrobial activity was
a result of antimicrobial peptide action on microbial membranes. The
amino acid composition, amphipathicity, cationic charge, and size,
allows many antimicrobial peptides to attach and insert into
well-defined membrane bilayers forming pores through
"barrel-stave," "toroid pore", or
"carpet" mechanisms. However, the roles of peptide
attraction, attachment, insertion, and pore formation in inducing
ultrastructural damage and killing of microorganisms still needs to be
clarified.
Does
it describe a new discovery, methodology, or synthesis of
knowledge?
Although the formation of ion channels, transmembrane pores,
and extensive membrane rupture, eventually leads to the lysis of
microbial cells (Table 2), there is a growing speculation that
they are not necessarily the sole mechanisms of microbial
killing. In fact, there is mounting evidence suggesting that
antimicrobial peptides have other intracellular targets that are
capable of rapidly killing microorganisms. Some of these are
early, basic observations showing that there are alternate sites
of antimicrobial peptide activity.
In fact, many of these antimicrobial peptides appear to have
intracellular targets (Table 2). They can alter cytoplasmic
membrane septum formation (e.g., PR-39, indolicidin, and
microcin 25); inhibit cell wall synthesis (e.g., mersacidin);
inhibit nucleic acid and protein synthesis (e.g., pleurocidin,
dermaseptin, PR-39, HNP-1, HNP-2, and indolicidin); or inhibit
enzymatic activity (e.g., histatins, pyrrhocoricin, drosocin,
and apidaecin) .

Could
you summarize the significance of your paper in layman’s terms?
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“This research identified a new class of host-derived peptide antibiotics as part of the innate immune system that are significantly different from those previously reported.”
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Antimicrobial peptides are an abundant and diverse
group of molecules that are produced by many tissues and cell types in
a variety of invertebrate, plant, and animal species. They are a
chemically and structurally diverse and multifunctional group of
molecules that are versatile in their mechanisms of microbial killing.
They have a variety of applications to prevent or treat infectious
disease in humans, animals, and plants; retard contamination of foods;
and retard spoilage of processed foods.
How
did you become involved in this research, and were any problems
encountered along the way?
In 1996, I entered the field of antimicrobial peptide
research when we isolated three small anionic peptides (AP) from sheep
lung lavage fluids that were antimicrobial, for ovine pathogens. The
peptides, H-GADDDDD-OH, H-GDDDDDD-OH, and H-DDDDDDD-OH, were found in
ovine surfactant extracts, bronchoalveolar lavage fluid, and airway
epithelial cells. They occurred in mM concentrations, required zinc as
a cofactor for antimicrobial activity, and were rapidly antimicrobial
against both Gram-positive and Gram-negative organisms.
This research identified a new class of host-derived
peptide antibiotics as part of the innate immune system that are
significantly different from those previously reported. Antimicrobial
anionic peptide (AP)-like molecules were later detected in human BAL
fluids and pulmonary epithelia in studies funded by the Cystic
Fibrosis Foundation. Such research demonstrated to us that not all
antimicrobial peptides kill by inducing lytic pores in microbial
membranes (Figure 3).
Are
there any social or political implications for your research?
The diverse mechanisms of antimicrobial activity lead
to a number of questions. First, how do these mechanisms relate to
applications where antimicrobial peptides are put into substrates or
tethered to surfaces?
Alternate mechanisms of antimicrobial activity can
explain why many of these peptides retain their specificity and
antimicrobial activity when incorporated into thin films, linked to
solid phase surfaces, or conjugated to larger carrier molecules 3,
4, 6-8.
Second, can carrier proteins be used to
"direct" antimicrobial activity to specific microorganisms
in a polymicrobial community? Such activity could target antimicrobial
activity towards a specific pathogen in a community of commensal
organisms thus eliminating the problems associated with eliminating
the entire community of commensals (e.g., oral cavity).
This field is maturing rapidly. The future is
promising with additional applications to come! Currently, there are
over 202 US patent applications involving antimicrobial peptides.
Kim A. Brogden, Ph.D.
Professor, Department of Periodontics and
Dows Institute for Dental Research
College of Dentistry
The University of Iowa
Iowa City, IA, USA
Acknowledgments: this work was supported by funds from
NIH/NIDCR R01 DE014390.

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ESI Special Topics,
August 2006
Citing URL - http://www.esi-topics.com/fbp/2006/august06-KimABrogden.html
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