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ESI Special Topics, March
2007 Citing URL: http://www.esi-topics.com/fmf/maps/march2007-map.html
This Research Front on GENE ONTOLOGY
from the field of Computer Science was selected for mapping from the list of Fast Moving Fronts
for March 2007. The map is a diagrammatic
representation of the 33 core papers comprising the front. Each
circle represents a highly cited paper whose bibliographic
information is displayed when the user clicks on the circle. The
lines between circles represent the strongest co-citation links
for each paper (that is, indicating that the papers are frequently cited
together). Papers close to each other on the map are generally
more highly co-cited. The most recent paper(s)
are indicated in red.
Core Papers
Label: Tanabe-2002 Title: Tagging gene and protein names in biomedical text Journal: BIOINFORMATICS, 18 (8): 1124-1132 AUG 2002 Citations: 59 Authors: Tanabe, L;Wilbur, WJ Addresses: ; Natl Lib Med, Natl Ctr Biotechnol Informat, NIH, Bethesda, MD 20894 USA ; Natl Lib Med, Natl Ctr Biotechnol Informat, NIH, Bethesda, MD 20894 USA
Label: Daraselia-2004 Title: Extracting human protein interactions from MEDLINE using a full-sentence parser Journal: BIOINFORMATICS, 20 (5): 604-U43 MAR 22 2004 Citations: 31 Authors: Daraselia, N;Yuryev, A;Egorov, S;Novichkova, S;Nikitin, A;Mazo, I Addresses: ; Ariadne Genom Inc, 9700 Great Seneca Hwy, Rockville, MD 20850 USA ; Ariadne Genom Inc, Rockville, MD 20850 USA
Label: Temkin-2003 Title: Extraction of protein interaction information from unstructured text using a context-free grammar Journal: BIOINFORMATICS, 19 (16): 2046-2053 NOV 1 2003 Citations: 28 Authors: Temkin, JM;Gilder, MR Addresses: ; GE Co, Global Res, 1 Res Circle, Niskayuna, NY 12309 USA ; GE Co, Global Res, Niskayuna, NY 12309 USA
Label: Chang-2004 Title: GAPSCORE: finding gene and protein names one word at a time Journal: BIOINFORMATICS, 20 (2): 216-225 JAN 22 2004 Citations: 16 Authors: Chang, JT;Schutze, H;Altman, RB Addresses: ; Stanford Univ, Med Ctr, Dept Genet, 300 Pasteur Dr,Lane L 301,Mail Code 5120, Stanford, CA 94305 USA ; Stanford Univ, Med Ctr, Dept Genet, Stanford, CA 94305 USA ; Enkata Technol, San Mateo, CA 94403 USA
Label: Chen-2005 Title: Gene name ambiguity of eukaryotic nomenclatures Journal: BIOINFORMATICS, 21 (2): 248-256 JAN 15 2005 Citations: 13 Authors: Chen, LF;Liu, HF;Friedman, C Addresses: ; Columbia Univ, Dept Biomed Informat, New York, NY 10032 USA ; Columbia Univ, Dept Biomed Informat, New York, NY 10032 USA ; Univ Maryland Baltimore Cty, Dept Informat Syst, Baltimore, MD 21250 USA
Label: Wu-2004 Title: The iProClass integrated database for protein functional analysis Journal: COMPUT BIOL CHEM, 28 (1): 87-96 FEB 2004 Citations: 13 Authors: Wu, CH;Huang, HZ;Nikolskaya, A;Hu, ZZ;Barker, WC Addresses: ; Georgetown Univ, Med Ctr, 3900 Reservoir Rd,NW,Box 571455,Preclin Bldg,Room, Washington, DC 20057 USA ; Georgetown Univ, Med Ctr, Washington, DC 20057 USA ; Natl Biomed Res Fdn, Washington, DC 20057 USA
Label: Krauthammer-2004 Title: Term identification in the biomedical literature Journal: J BIOMED INFORM, 37 (6): 512-526 DEC 2004 Citations: 12 Authors: Krauthammer, M;Nenadic, G Addresses: ; Yale Univ, Sch Med, Dept Pathol, POB 208023,310 Cedar St, New Haven, CT 06520 USA ; Columbia Univ, Columbia Genome Ctr, Dept Biomed Informat, New York, NY 10027 USA ; UMIST, Dept Computat, Manchester M60 1QD, Lancs, England ; Natl Ctr Text Min, Manchester, Lancs, England
Label: Cohen-2005 Title: A survey of current work in biomedical text mining Journal: BRIEF BIOINFORM, 6 (1): 57-71 MAR 2005 Citations: 8 Authors: Cohen, AM;Hersh, WR Addresses: ; Oregon Hlth Sci Univ, Sch Med, Dept Med Informat & Clin Epidemiol, Portland, OR USA
Label: Lee-2004 Title: Biomedical named entity recognition using two-phase model based on SVMs Journal: J BIOMED INFORM, 37 (6): 436-447 DEC 2004 Citations: 8 Authors: Lee, KJ;Hwang, YS;Kim, S;Rim, HC Addresses: ; Korea Univ, Dept Comp Sci & Engn, Nat Language Proc Lab, 1,5 Ka Anam Dong, Seoul 136701, South Korea ; Korea Univ, Dept Comp Sci & Engn, Nat Language Proc Lab, Seoul 136701, South Korea
Label: Camon-2005 Title: An evaluation of GO annotation retrieval for BioCreAtIvE and GOA Journal: BMC BIOINFORMATICS, 6: art. no.-S17 Suppl. 1 MAY 24 2005 Citations: 6 Authors: Camon, EB;Barrell, DG;Dimmer, EC;Lee, V;Magrane, M;Maslen, J;Binns, D;Apweiler, R Addresses: ; European Mol Biol Lab, European Bioinformat Inst, Wellcome Trust Genome Campus, Cambridge CB10 1SD, England ; European Mol Biol Lab, European Bioinformat Inst, Cambridge CB10 1SD, England
Label: Tamames-2005 Title: Text Detective: a rule-based system for gene annotation in biomedical texts Journal: BMC BIOINFORMATICS, 6: art. no.-S10 Suppl. 1 MAY 24 2005 Citations: 6 Authors: Tamames, J Addresses: ; Alma Bioinformat SL, Ronda Poniente 4, Madrid 28750, Spain ; Alma Bioinformat SL, Madrid 28750, Spain
Label: Rice-2005 Title: Mining protein function from text using term-based support vector machines Journal: BMC BIOINFORMATICS, 6: art. no.-S22 Suppl. 1 MAY 24 2005 Citations: 4 Authors: Rice, SB;Nenadic, G;Stapley, BJ Addresses: ; Univ Manchester, Fac Life Sci, Manchester M13 9PL, Lancs, England ; Univ Manchester, Fac Life Sci, Manchester M13 9PL, Lancs, England ; Univ Manchester, Sch Informat, Manchester M13 9PL, Lancs, England ; Natl Ctr Text Min, Manchester, Lancs, England
Label: McDonald-2005 Title: Identifying gene and protein mentions in text using conditional random fields Journal: BMC BIOINFORMATICS, 6: art. no.-S6 Suppl. 1 MAY 24 2005 Citations: 3 Authors: McDonald, R;Pereira, F Addresses: ; Univ Penn, Dept Comp & Informat Sci, Levine Hall,3330 Walnut St, Philadelphia, PA 19104 USA ; Univ Penn, Dept Comp & Informat Sci, Philadelphia, PA 19104 USA
Label: Verspoor-2005 Title: Protein annotation as term categorization in the gene ontology using word proximity networks Journal: BMC BIOINFORMATICS, 6: art. no.-S20 Suppl. 1 MAY 24 2005 Citations: 3 Authors: Verspoor, K;Cohn, J;Joslyn, C;Mniszewski, S;Rechtsteiner, A;Rocha, LM;Simas, T Addresses: ; Los Alamos Natl Lab, POB 1663,MS B256, Los Alamos, NM 87545 USA ; Los Alamos Natl Lab, Los Alamos, NM 87545 USA ; Indiana Univ, Sch Informat, Bloomington, IN 47406 USA ; Indiana Univ, Cognit Sci Program, Bloomington, IN 47405 USA
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