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New Hot Paper Comments

By Denis Lynn

ESI Special Topics, March 2007
Citing URL - http://www.esi-topics.com/nhp/2007/march-07-DenisLynn.html

Denis Lynn answers a few questions about this month's new hot paper in the field of Microbiology.


From •>>March 2007

Field: Microbiology
Article Title: The new higher level classification of eukaryotes with emphasis on the taxonomy of protists
Authors: Adl, SM;Simpson, AGB;Farmer, MA;Andersen, RA;Anderson, OR;Barta, JR;Bowser, SS;Brugerolle, G;Fensome, RA;Fredericq, S;James, TY;Karpov, S;Kugrens, P;Krug, J;Lane, CE;Lewis, LA;Lodge, J;Lynn, DH;Mann, DG;McCourt, RM;Mendoza, L;Moestrup, O;Mozley-Standridge, SE;Nerad, TA;Shearer, CA;Smirnov, AV;Spiegel, FW;Taylor, MFJR
Journal: J EUKARYOT MICROBIOL
Volume: 52
Issue: 5
Page: 399-451
Year: SEP-OCT 2005
* Univ Guelph, Dept Integrat Biol, Guelph, ON N1G 2W1, Canada.
* Univ Guelph, Dept Integrat Biol, Guelph, ON N1G 2W1, Canada.
* Dalhousie Univ, Dept Biol, Halifax, NS B3H 4J1, Canada.
* Univ Georgia, Dept Cellular Biol, Ctr Ultrastruct Res, Athens, GA 30602 USA.
* Bigelow Lab Ocean Sci, Boothbay Harbor, ME 04575 USA.
* Lamont Dogherty Earth Observ, Palisades, NY 10964 USA.
* Univ Guelph, Ontario Vet Coll, Dept Pathobiol, Guelph, ON N1G 2W1, Canada.
* New York State Dept Hlth, Wadsworth Ctr, Albany, NY 12201 USA.
* Univ Clermont Ferrand, F-63177 Aubiere, France.
* Bedford Inst Oceanog, Nat Resources Canada, Geol Survey Canada, Dartmouth, NS B2Y 4A2, Canada.
* Univ Louisiana, Dept Biol, Lafayette, LA 70504 USA.
* Duke Univ, Dept Biol, Durham, NC 27708 USA.
* Herzen State Pedag Univ Russia, Fac Biol, St Petersburg 191186, Russia.
* Colorado State Univ, Dept Biol, Ft Collins, CO USA.
* Royal Ontario Museum, Mycol Sect, Ctr Biodivers & Conservat Biol, Toronto, ON M5S 2C6, Canada.
* Univ Toronto, Dept Bot, Toronto, ON M5S 3B2, Canada.
* Dalhousie Univ, Dept Biochem, Halifax, NS B3H 4J1, Canada.
* Univ Connecticut, Dept Ecol & Evolutionary Biol, Storrs, CT 06269 USA.
* USDA, US Forest Serv, Ctr Forest Mycol Res, Luquillo, PR USA.
* Univ Guelph, Dept Integrat Biol, Guelph, ON N1G 2W1, Canada.
* Royal Bot Gardens, Edinburgh EH3 5LR, Midlothian, Scotland.
* Acad Nat Sci, Philadelphia, PA 19103 USA.
* Michigan State Univ, Dept Microbiol & Mol Genet, Med Technol Program, E Lansing, MI 48824 USA.
* Univ Copenhagen, Dept Phycol, DK-1353 Copenhagen, Denmark.
* Univ Georgia, Dept Plant Biol, Athens, GA 30606 USA.
* George Mason Univ, Manassas, VA 20110 USA.
* Univ Illinois, Dept Plant Biol, Urbana, IL 61801 USA.
* St Petersburg State Univ, Dept Invertebrate Zool, St Petersburg 199034, Russia.
* Univ British Columbia, Dept Oceanog, Vancouver, BC V6T 1Z4, Canada.

ST:  Why do you think your paper is highly cited?


“uncertainties still remain for several of the major groups (e.g., CHROMALVEOLATA, EXCAVATA) and many genera, some of which have not been rediscovered since their original description.”

Our article is highly cited because it synthesizes knowledge across all major groups of eukaryotes. Since classification of organisms provides the major means of how we communicate about biological diversity, this paper is of great interest. It is a systematic and synthetic treatment that was arrived at by extensive discussion among the 28 contributing authors whose expertise ranged across all the major eukaryotic groups.

ST:  Could you summarize the significance of your paper in layman’s terms?

Larger view

The cover for the issue (J Eukaryot Microbiol., 52, 5 399-451, SEP-OCT 2005) of the journal in which the article appeared. It presents a view of the phylogeny of eukaryotes, reflecting the classification that we presented, which divides eukaryotes into the six major clades: AMOEBOZOA, OPISTHOKONTA, RHIZARIA, ARCHAEPLASTIDA, CHROMALVEOLATA, and EXCAVATA.

 

We considered both morphological and molecular characteristics of organisms in assessing relationships and defining the groups, assigning them to six major clades. Nevertheless, uncertainties still remain for several of the major groups (e.g., CHROMALVEOLATA, EXCAVATA) and many genera, some of which have not been rediscovered since their original description. However, there is unanimity on the point that the five-kingdom system with its four eukaryotic kingdoms to classify biological diversity is now no longer an appropriate representation of the adaptive divergence of life on Earth.

ST:  How did you become involved in this research and were there successes or failures?

I became involved in this research as the Chair of the "Committee on Systematics and Evolution of The International Society of Protistologists."

This Society, as protozoologists, had published higher classifications of protozoa in 1964 under the leadership of the late Dr. Bronislaw M. Honigberg of the Center for Parasitology at the University of Massachusetts, Amherst, and, in 1980, under the leadership of the late Dr. Norman D. Levine of the College of Veterinary Medicine at the University of Illinois in Urbana.

It seemed timely therefore for our Society to undertake a new revision. However, this time, in keeping with our broadened mandate for the protists, we extended our treatment to all eukaryotes.

There were probably two major obstacles involved in the completion of the work. First, there was considerable discussion about presenting our system as a rankless hierarchy—we have not used the taxon categories of kingdom, phylum, class, order, and so on.

While we did not reach unanimity on this point, there was agreement of all concerned to proceed in this way. The second major obstacle was completing a work with 28 contributing authors, and Dr. Sina Adl, the first author, provided the impetus and encouragement to coordinate our disparate contributions into one unified paper that was finally edited by me. The final result has been a rewarding experience.End

Dr. Denis Lynn, Professor
Editor in Chief, The Journal of Eukaryotic Microbiology
Chair, Committee on Systematics and Evolution
The International Society of Protistologists
Department of Integrative Biology
University of Guelph
Guelph, ON, Canada

ESI Special Topics, March 2007
Citing URL - http://www.esi-topics.com/nhp/2007/march-07-DenisLynn.html

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